rs287978 chr2:9830405 T>C
- Sequence
gctgggattacaggcgtgagtcac[T/C]gtgcccagccctagacttttattt
- ASB in cell types
- K562 (myelogenous leukemia) breast tumor tissue
- ASB for transcription factors
- ATF3_HUMAN ESR1_HUMAN GRHL2_HUMAN IKZF1_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | n/a | 2.59 | 2.00 | n/a | No Hit | |||
| ESR1_HUMAN | 0.35 | 1.20 | 1.59 | 5.77 | Concordant | |||
| GRHL2_HUMAN | 0.98 | 0.43 | 1.50 | n/a | No Hit | |||
| IKZF1_HUMAN | -0.64 | 1.78 | 2.00 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Stomach, Testis, Thyroid, Whole_Blood