rs2892233 chr19:48656998 G>A
- Sequence
aaatctgaaatgtgaaagggactc[G/A]acctgtcgtggttggccgtgaaga
- ASB in cell types
- HEK293 (embryonic kidney) keratinocytes
- ASB for transcription factors
- SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SNAI2_HUMAN | -1.44 | 1.29 | 1.50 | 1.48 | Weak Concordant |
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Motif analysis
Genetic associations
GRASP adiponectin levels, advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, arthritis including non-rheumatoid, cystatin c in serum, eye color, hypertension (early onset hypertension), infant head circumference, longstanding arthritis, schizophrenia, urinary albumin-to-creatinine ratio
GTEx eQTL Brain_Hippocampus, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Lung, Minor_Salivary_Gland, Pancreas