rs2893970 chr6:28735504 T>C
- Sequence
ctaccactgagctacacccccact[T/C]acaatgccgttttcttactgattt
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- ARNT_HUMAN ZNF24_HUMAN IKZF1_HUMAN EGR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARNT_HUMAN | -1.09 | 1.94 | 3.00 | n/a | No Hit | |||
| ZNF24_HUMAN | -0.19 | 1.07 | 2.67 | n/a | n/a | |||
| IKZF1_HUMAN | -1.03 | 1.89 | 3.00 | n/a | No Hit | |||
| EGR1_HUMAN | -0.68 | 2.14 | 3.00 | 0.93 | Weak Concordant | |||
| ZN316_HUMAN | n/a | 2.19 | 3.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Brain_Caudate_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Testis, Thyroid, Whole_Blood