rs2903925 chr20:47432355 C>T
- Sequence
aatttttttagccatcatgtattg[C/T]ataaaaacagtgggagagttgatc
- ASB in cell types
- HepG2 (hepatoblastoma) SUM159PT (pleiomorphic breast carcinoma)
- ASB for transcription factors
- CEBPB_HUMAN CEBPA_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 1.79 | -1.89 | 1.92 | -4.65 | Concordant | |||
| CEBPA_HUMAN | 1.77 | -1.46 | 1.50 | n/a | No Hit |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, aortic valve calcium, infant head circumference, ldl cholesterol