rs290436 chr20:54062953 C>G
- Sequence
ttactgccatctattggctgatgt[C/G]aatattagcagaaatgaattcagc
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte GM12878 (female B-cells) transverse colon
- ASB for transcription factors
- IKZF2_HUMAN HDAC1_HUMAN RB_HUMAN PBX2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF2_HUMAN | 2.29 | n/a | 1.50 | n/a | n/a | |||
| HDAC1_HUMAN | -1.77 | 1.44 | 2.00 | n/a | n/a | |||
| RB_HUMAN | 2.02 | -1.75 | 1.33 | n/a | n/a | |||
| PBX2_HUMAN | -2.78 | 2.24 | 2.00 | n/a | No Hit | |||
| RELB_HUMAN | 1.77 | n/a | 1.33 | n/a | No Hit |
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