rs291348 chr1:235504390 G>A
- Sequence
gccctcgcgctcggcgacgtctgg[G/A]gggctcctcgcagctcccggcccc
- ASB in cell types
- A549 (lung carcinoma) GM12878 (female B-cells) PANC1 (pancreatic ductal adenocarcinoma)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN KDM5B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | -0.11 | 1.15 | 2.00 | n/a | No Hit | |||
| BCL3_HUMAN | -1.09 | 1.64 | 2.00 | n/a | n/a | |||
| KDM5B_HUMAN | -1.59 | 1.51 | 2.25 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cortex, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Small_Intestine_Terminal_Ileum, Spleen, Testis, Thyroid, Whole_Blood