rs292377 chr18:5103505 C>T
- Sequence
ccagcctggagatggcaccagagg[C/T]atctgtataacaaaccttactaac
- ASB in cell types
- NB69 (neuroblastoma)
- ASB for transcription factors
- CTCF_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.41 | -0.08 | 1.08 | 0.65 | Weak Discordant |
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Motif analysis
Genetic associations
GRASP fasting insulin, homa-b, homa-ir, ldl cholesterol, obesity with early age of onset (age >2), parkinsons disease