rs293540 chr20:32485365 G>A
- Sequence
gtaaacaaggctccctctacagcc[G/A]cgagtgcgaagtacaaccccacag
- ASB in cell types
- GM12878 (female B-cells) HepG2 (hepatoblastoma) foreskin keratinocyte HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN FOXK2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.66 | 0.86 | 1.67 | -0.06 | Weak Concordant | |||
| FOXK2_HUMAN | 3.00 | -0.18 | 1.42 | n/a | n/a |
Items per page:
1 – 2 of 2
Motif analysis
