rs296533 chr1:200896640 G>T
- Sequence
tgttgctttcagggctttgtgttt[G/T]attgttgctgcctgtggttgctgt
- ASB in cell types
- A549 (lung carcinoma) HepG2 (hepatoblastoma)
- ASB for transcription factors
- JUN_HUMAN BCL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| JUN_HUMAN | 1.22 | -0.17 | 2.00 | n/a | No Hit | |||
| BCL3_HUMAN | 1.04 | 0.02 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, amyotrophic lateral sclerosis (als), cystatin c in serum, irritible bowel syndrome, late onset alzheimers disease, ldl cholesterol, tetrology of fallot
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Coronary, Artery_Tibial, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Testis, Whole_Blood