rs2966 chr6:33721743 C>T
- Sequence
tctcagtgcttgactcaagggcat[C/T]gtaataggtttccatactgcagaa
- ASB in cell types
- VCaP (prostate carcinoma)
- ASB for transcription factors
- HXB13_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HXB13_HUMAN | -0.72 | 1.56 | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP alzheimers disease, body mass index (bmi), college completion, coronary artery disease (cad), diabetic retinopathy in type 2 diabetes mellitus, height, obesity (body mass index (bmi)), rheumatoid arthritis, serum creatinine, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood