rs296888 chr9:83980583 G>A
- Sequence
aaacagaggataatggcgtctgca[G/A]tgctgtcgcctggagcgccctcct
- ASB in cell types
- tibial nerve CD14+ monocytes SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- CTCF_HUMAN AP2C_HUMAN STAT1_HUMAN PO2F2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.15 | 0.37 | 1.30 | n/a | No Hit | |||
| AP2C_HUMAN | 2.22 | -0.40 | 1.50 | n/a | No Hit | |||
| STAT1_HUMAN | 1.63 | 0.53 | 2.11 | n/a | No Hit | |||
| PO2F2_HUMAN | 1.77 | n/a | 1.33 | n/a | No Hit | |||
| TAF1_HUMAN | 1.32 | 0.57 | 1.39 | -0.79 | Weak Concordant |
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Motif analysis
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood