rs296890 chr9:83980816 C>A
- Sequence
gaggtaaaaaaggaactgggagcg[C/A]gccgcggcggttcctgtccttaca
- ASB in cell types
- monocyte-derived macrophages CD14+ monocytes LNCaP (prostate carcinoma) GM12878 (female B-cells)
- ASB for transcription factors
- SPI1_HUMAN STAT1_HUMAN CTCF_HUMAN E2F1_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SPI1_HUMAN | 1.49 | -0.25 | 2.03 | n/a | No Hit | |||
| STAT1_HUMAN | 1.20 | 0.24 | 2.11 | n/a | No Hit | |||
| CTCF_HUMAN | 0.70 | 0.20 | 1.31 | n/a | No Hit | |||
| E2F1_HUMAN | 1.26 | -0.02 | 1.17 | n/a | No Hit | |||
| TF65_HUMAN | 2.01 | n/a | 2.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Spinal_cord_cervical_c-1, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood