rs298521 chr5:17312560 A>T
- Sequence
ttcttaaagaagctggtggcgttc[A/T]agacacttgacgtgtttgctgaag
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) T47D (invasive ductal carcinoma)
- ASB for transcription factors
- FOXA1_HUMAN GATA3_HUMAN ESR1_HUMAN FOS_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOXA1_HUMAN | 1.40 | 0.93 | 2.25 | n/a | No Hit | |||
| GATA3_HUMAN | 1.07 | -0.34 | 2.50 | n/a | No Hit | |||
| ESR1_HUMAN | 0.85 | 0.36 | 2.12 | n/a | No Hit | |||
| FOS_HUMAN | 2.20 | n/a | 3.00 | n/a | n/a |
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