rs299299 chr5:163505816 T>G
- Sequence
ccgagggggacgagccaccggggc[T/G]cgggcggctttgcaggcgtattcc
- ASB in cell types
- K562 (myelogenous leukemia) A549 (lung carcinoma) erythroid cells
- ASB for transcription factors
- EGR1_HUMAN KMT2A_HUMAN FOXK2_HUMAN HDAC2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| EGR1_HUMAN | n/a | 2.52 | 2.00 | 3.34 | Concordant | |||
| KMT2A_HUMAN | 1.44 | 1.12 | 1.17 | n/a | n/a | |||
| FOXK2_HUMAN | -2.12 | 2.09 | 2.00 | n/a | n/a | |||
| HDAC2_HUMAN | -1.15 | 1.94 | 2.00 | n/a | n/a | |||
| JUN_HUMAN | 0.91 | -0.37 | 2.00 | n/a | No Hit |
Items per page:
1 – 5 of 6
Motif analysis
