rs300925 chr4:143263040 C>T
- Sequence
caactccccagatttgctgactaa[C/T]gcttttaatgaatgtctttctaca
- ASB in cell types
- K562 (myelogenous leukemia) HepG2 (hepatoblastoma) A549 (lung carcinoma)
- ASB for transcription factors
- MAFK_HUMAN MAFG_HUMAN ZN316_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAFK_HUMAN | -1.03 | 1.66 | 1.33 | 2.05 | Concordant | |||
| MAFG_HUMAN | -1.97 | 2.04 | 2.00 | 3.12 | Concordant | |||
| ZN316_HUMAN | n/a | 2.30 | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP adiponectin levels, bipolar disorder, combined control dataset, gender differentiated, cystatin c in serum, hdl cholesterol, height, salmonella-induced pyroptosis, serum creatinine
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Cells_Cultured_fibroblasts, Testis, Whole_Blood