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rs3013 chr12:48693873 G>C

Sequence
agccttttccagaaaaggccgctc[G/C]gggttttctgaaccctctatgggc
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
SMCA4_HUMAN NCOR1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (C) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SMCA4_HUMAN 2.17 -0.93 8.6·10-30.95 2.00 n/a n/a
NCOR1_HUMAN 2.12 -0.55 0.011.00 2.00 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP adiponectin levels advanced age-related macular degeneration (geographic atrophy) hdl cholesterol ldl cholesterol prop taste detection threshold refractive error
GTEx eQTL Adipose_Subcutaneous Artery_Tibial Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Hippocampus Breast_Mammary_Tissue Heart_Left_Ventricle Lung Muscle_Skeletal Nerve_Tibial Pituitary Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Thyroid

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