rs30177 chr5:132866719 C>G
- Sequence
agtggggtctggttgtgcagtgtt[C/G]gtggaccctgggaggctaggggcg
- ASB in cell types
- K562 (myelogenous leukemia) Jurkat (T-cells) H1 (embryonic stem cells)
- ASB for transcription factors
- GABPA_HUMAN CTCF_HUMAN PHF8_HUMAN RFOX2_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 1.65 | -0.76 | 1.93 | n/a | No Hit | |||
| CTCF_HUMAN | 0.33 | 0.62 | 1.19 | n/a | No Hit | |||
| PHF8_HUMAN | 1.95 | -1.72 | 1.50 | n/a | n/a | |||
| RFOX2_HUMAN | 2.21 | -3.09 | 2.00 | n/a | n/a | |||
| SMC3_HUMAN | 0.98 | -0.90 | 1.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood