rs30178 chr5:132866707 T>C
- Sequence
gccctgtgcgtgagtggggtctgg[T/C]tgtgcagtgttcgtggaccctggg
- ASB in cell types
- K562 (myelogenous leukemia) Jurkat (T-cells)
- ASB for transcription factors
- GABPA_HUMAN CTCF_HUMAN PML_HUMAN PO2F2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | 2.06 | -0.08 | 1.94 | n/a | No Hit | |||
| CTCF_HUMAN | 0.41 | 0.63 | 1.18 | n/a | No Hit | |||
| PML_HUMAN | 1.57 | -1.26 | 1.67 | n/a | n/a | |||
| PO2F2_HUMAN | 1.35 | -1.01 | 1.42 | n/a | No Hit | |||
| RFOX2_HUMAN | 2.20 | -3.03 | 2.00 | n/a | n/a |
Items per page:
1 – 5 of 5
Motif analysis
No data available
Genetic associations
GRASP adiponectin levels, bipolar disorder, fasting blood glucose, infant head circumference, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood