rs301790 chr1:8409224 G>C
- Sequence
agaagaggaatggccaacccgatt[G/C]ctgaggattcatgtttagccccga
- ASB in cell types
- HEK293 (embryonic kidney) HEK293T (embryonic kidney) esophagus muscularis mucosa MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ZBT20_HUMAN ZN341_HUMAN CTCF_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZBT20_HUMAN | -1.79 | 2.22 | 2.00 | n/a | n/a | |||
| ZN341_HUMAN | -2.77 | 2.25 | 2.00 | n/a | No Hit | |||
| CTCF_HUMAN | 0.39 | 0.71 | 1.34 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cortex, Brain_Hippocampus, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Thyroid, Whole_Blood