rs3019515 chr10:122565893 T>G
- Sequence
tctggtgtgattgtacggtgaagc[T/G]aaagccaatttctgtgacttgtag
- ASB in cell types
- A549 (lung carcinoma) HeLa S3 (cervical adenocarcinoma) HCT-116 (colon carcinoma) HeLa Kyoto (cervical adenocarcinoma)
- ASB for transcription factors
- SMC3_HUMAN RAD21_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| SMC3_HUMAN | 1.38 | -0.26 | 1.95 | n/a | n/a | |||
| RAD21_HUMAN | 1.36 | 0.38 | 1.85 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Cerebellar_Hemisphere, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Brain_Spinal_cord_cervical_c-1, Colon_Transverse, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg