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rs302647 chr11:88175178 C>G

Sequence
tccccctgaccccctccccccgcg[C/G]tcacctgcgatatcccagagctgc
ASB in cell types
keratinocytes
ASB for transcription factors
SNAI2_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
SNAI2_HUMAN n/a 3.12 1.002.2·10-8 1.50 0.32 Weak Concordant
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Motif analysis

SNAI2_HUMAN Weak Concordant
SNAI2_HUMAN pic

Genetic associations

GRASP adiponectin levels hdl cholesterol obesity with early age of onset (age >2) total cholesterol
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Tibial Brain_Nucleus_accumbens_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Lung Muscle_Skeletal Nerve_Tibial Ovary Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Spleen Stomach Whole_Blood

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