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rs303760 chr18:23503774 C>T

Sequence
gcggccctgccggggtcgtgggcg[C/T]gccaaggccggtcccgcgcgacca
ASB in cell types
K562 (myelogenous leukemia)
ASB for transcription factors
EGR1_HUMAN MNT_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (C) ASB
color scale alt
-log10 FDR of Alt (T) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
EGR1_HUMAN -1.86 2.09 1.003.1·10-7 1.78 2.67 Concordant
MNT_HUMAN -0.68 1.46 1.000.01 1.33 n/a n/a
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Motif analysis

EGR1_HUMAN Concordant
EGR1_HUMAN pic

Genetic associations

EMBL-EBI hand grip strength
GTEx eQTL Adipose_Subcutaneous Adipose_Visceral_Omentum Artery_Aorta Artery_Coronary Artery_Tibial Brain_Anterior_cingulate_cortex_BA24 Brain_Caudate_basal_ganglia Brain_Cerebellar_Hemisphere Brain_Cerebellum Brain_Cortex Brain_Frontal_Cortex_BA9 Brain_Nucleus_accumbens_basal_ganglia Brain_Putamen_basal_ganglia Breast_Mammary_Tissue Cells_Cultured_fibroblasts Colon_Sigmoid Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Mucosa Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Lung Minor_Salivary_Gland Muscle_Skeletal Nerve_Tibial Pancreas Prostate Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Stomach Thyroid Uterus Whole_Blood

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