rs304725 chr19:43594811 C>G
- Sequence
cagccagaaagccggcactcacct[C/G]cgcagcgcttctgcctggctctgc
- ASB in cell types
- K562 (myelogenous leukemia) foreskin keratinocyte PC9 (lung adenocarcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- ARI1B_HUMAN EP400_HUMAN KDM1A_HUMAN RB_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ARI1B_HUMAN | 2.59 | n/a | 2.00 | n/a | n/a | |||
| EP400_HUMAN | 2.42 | -3.68 | 2.00 | n/a | n/a | |||
| KDM1A_HUMAN | 1.82 | -1.46 | 2.00 | n/a | n/a | |||
| RB_HUMAN | 2.16 | 0.11 | 1.50 | n/a | n/a |
Items per page:
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), urinary albumin-to-creatinine ratio
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Nucleus_accumbens_basal_ganglia, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Nerve_Tibial, Ovary, Pancreas, Prostate, Skin_Sun_Exposed_Lower_leg, Stomach, Thyroid, Whole_Blood