rs306289 chr7:155008174 T>C
- Sequence
agctgctaaacatcacgcaacgca[T/C]gggaccgtcctccatgacaaagga
- ASB in cell types
- K562 (myelogenous leukemia) 22RV1 (prostate carcinoma) HEK293 (embryonic kidney) foreskin keratinocyte
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| K562 (myelogenous leukemia) | 0.16 | 0.76 | 1.51 | |||
| 22RV1 (prostate carcinoma) | -2.59 | 2.90 | 2.00 | |||
| HEK293 (embryonic kidney) | 0.72 | -0.17 | 1.99 | |||
| foreskin keratinocyte | -0.01 | 1.69 | 2.00 | |||
| SK-N-SH (neuroblastoma) | 2.00 | n/a | 2.00 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood