rs3086 chr1:174167236 A>C
- Sequence
tccccctcttttttgaggcatgtt[A/C]gttttcacgaattgaggttattag
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- HTF4_HUMAN TIF1A_HUMAN MAFG_HUMAN SMCA4_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HTF4_HUMAN | 1.57 | n/a | 3.00 | n/a | No Hit | |||
| TIF1A_HUMAN | 2.68 | n/a | 3.00 | n/a | n/a | |||
| MAFG_HUMAN | 0.97 | n/a | 2.50 | n/a | No Hit | |||
| SMCA4_HUMAN | 2.58 | n/a | 3.00 | n/a | n/a | |||
| PRD10_HUMAN | 2.52 | n/a | 3.00 | n/a | n/a |
Items per page:
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Motif analysis
No data available
Genetic associations
GRASP college completion, ldl cholesterol, obesity with early age of onset (age >2), total cholesterol, waist hip ratio
GTEx eQTL Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Substantia_nigra, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Muscle_Skeletal, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Testis, Thyroid, Whole_Blood