rs308929 chr16:77732743 A>G
- Sequence
ctgtgttgtttacacgatgatgaa[A/G]tcgcctaatgcatttttcagaacg
- ASB in cell types
- HepG2 (hepatoblastoma) mesenchymal stem cells
- ASB for transcription factors
- CEBPB_HUMAN NFIL3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPB_HUMAN | 2.13 | -2.03 | 1.33 | -4.44 | Concordant | |||
| NFIL3_HUMAN | 1.95 | n/a | 2.00 | n/a | n/a |
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Motif analysis
Genetic associations
GRASP ldl cholesterol, major depressive disorder, maternal transmission distortion, sporadic creutzfeldt-jakob disease, transmission distortion
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Nerve_Tibial, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Vagina