rs3096689 chr6:32178222 C>G
- Sequence
aagccctccttggccaggcgacag[C/G]gtgtagcgagttattaccaatccc
- ASB in cell types
- LoVo (colorectal adenocarcinoma) H1 (embryonic stem cells) CD14+ monocytes
- ASB for transcription factors
- CREB1_HUMAN NFYA_HUMAN SP1_HUMAN STAT1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CREB1_HUMAN | 1.25 | -0.13 | 1.38 | n/a | No Hit | |||
| NFYA_HUMAN | 2.16 | -1.96 | 1.33 | n/a | No Hit | |||
| SP1_HUMAN | 1.30 | 0.08 | 1.33 | n/a | No Hit | |||
| STAT1_HUMAN | 1.00 | -0.26 | 2.21 | n/a | No Hit | |||
| SP2_HUMAN | 1.27 | -0.79 | 1.33 | 2.08 | Discordant |
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Motif analysis
Genetic associations
GRASP advanced age-related macular degeneration, advanced age-related macular degeneration (choroidal neovascularization) vs. no amd, advanced age-related macular degeneration (geographic atrophy), college completion, cystatin c in serum, fasting insulin, height, infant head circumference, ldl cholesterol, rheumatoid arthritis, total cholesterol, triglycerides, years of education
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Amygdala, Brain_Anterior_cingulate_cortex_BA24, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Kidney_Cortex, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Vagina, Whole_Blood