ADASTRA v1.6.10
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rs310623
chr20:63520461
C
>
G
Sequence
tggaccaggcggggctccgagacg[C/G]gtccgagacgggggcctgggcccg
ASB in cell types
K562 (myelogenous leukemia)
breast tumor tissue
ASB for transcription factors
NRF1_HUMAN
RING2_HUMAN
AP2A_HUMAN
ESR1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
NRF1_HUMAN
-1.29
1.73
1.00
0.01
2.00
n/a
No Hit
RING2_HUMAN
n/a
2.46
1.00
0.03
2.00
n/a
n/a
AP2A_HUMAN
1.76
-1.36
0.04
1.00
2.00
n/a
No Hit
ESR1_HUMAN
1.41
n/a
0.04
1.00
2.50
n/a
No Hit
Items per page:
5
1 – 4 of 4
Motif analysis
No data available
Genetic associations
GTEx eQTL
Artery_Tibial
,
Cells_Cultured_fibroblasts
,
Nerve_Tibial
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)