rs312017 chr11:68297805 T>C
- Sequence
ccctggccacgtccatcttccacg[T/C]cctcccacgcagccccctccgccc
- ASB in cell types
- A549 (lung carcinoma) HEK293 (embryonic kidney) neural cell
- ASB for transcription factors
- CTCF_HUMAN RAD21_HUMAN SMC3_HUMAN
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-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.83 | 0.43 | 1.48 | n/a | No Hit | |||
| RAD21_HUMAN | 0.93 | -0.23 | 1.80 | n/a | n/a | |||
| SMC3_HUMAN | 0.94 | -0.18 | 1.92 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Aorta, Artery_Tibial, Brain_Amygdala, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg