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rs312149 chr12:104723151 G>A

Sequence
cctcccctgggagtcatgatagca[G/A]tcagcagtattaacaacaatgaca
ASB in cell types
GM12878 (female B-cells) SK-N-SH (neuroblastoma)
ASB for transcription factors
ZN143_HUMAN COE1_HUMAN COE3_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (G) ASB
color scale alt
-log10 FDR of Alt (A) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
ZN143_HUMAN 1.71 -1.63 0.011.00 1.00 n/a No Hit
COE1_HUMAN 1.47 -0.59 0.011.00 1.33 n/a No Hit
COE3_HUMAN -1.65 1.46 1.000.03 1.33 n/a n/a
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Motif analysis

No data available

Genetic associations

GRASP advanced age-related macular degeneration (choroidal neovascularization) vs. no amd college completion total cholesterol change with statins triglycerides change with statins
GTEx eQTL Colon_Transverse Skin_Not_Sun_Exposed_Suprapubic Thyroid

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