rs3130042 chr6:30571350 A>G
- Sequence
aaccagggccacgcccccgagatg[A/G]cggcgaagctcgcacgtgcgcagc
- ASB in cell types
- K562 (myelogenous leukemia) MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- CLOCK_HUMAN EP400_HUMAN MAX_HUMAN SOX6_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CLOCK_HUMAN | 2.82 | n/a | 2.00 | n/a | No Hit | |||
| EP400_HUMAN | n/a | 0.80 | 3.00 | n/a | n/a | |||
| MAX_HUMAN | -0.65 | 2.39 | 3.00 | n/a | No Hit | |||
| SOX6_HUMAN | n/a | 2.96 | 3.00 | n/a | n/a | |||
| NR2C1_HUMAN | n/a | 2.56 | 3.00 | n/a | No Hit |
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