rs3136229 chr2:47782786 G>A
- Sequence
gggtccccccggttatccccgccc[G/A]ggcggtgcgcgcccccgctgttcc
- ASB in cell types
- HepG2 (hepatoblastoma) CD14+ monocytes HEK293 (embryonic kidney) HEK293T (embryonic kidney)
- ASB for transcription factors
- GABPA_HUMAN STAT1_HUMAN GABP1_HUMAN
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-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| GABPA_HUMAN | -1.66 | 1.87 | 2.00 | n/a | No Hit | |||
| STAT1_HUMAN | 2.14 | n/a | 2.50 | n/a | No Hit | |||
| GABP1_HUMAN | n/a | 2.44 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cortex, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Esophagus_Muscularis, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Whole_Blood