rs315435 chr17:31655119 A>G
- Sequence
gccaaccaagccctgcagtggggc[A/G]aggtgtcaggcaggatgtgtcaga
- ASB in cell types
- T47D (invasive ductal carcinoma) breast tumor tissue SK-BR-3 (breast adenocarcinoma)
- ASB for transcription factors
- ESR1_HUMAN HIF1A_HUMAN AP2C_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 1.01 | 1.43 | 1.72 | -2.34 | Concordant | |||
| HIF1A_HUMAN | 2.22 | n/a | 2.00 | n/a | No Hit | |||
| AP2C_HUMAN | 1.94 | -3.87 | 2.50 | n/a | No Hit |
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Motif analysis
