rs316409 chr5:43065367 G>T
- Sequence
ccaaaaaaaaatttttttttttga[G/T]tatacaaaacatacaaagcatcct
- ASB in cell types
- GM12878 (female B-cells) spleen
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Cell type | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | |
|---|---|---|---|---|---|---|
| GM12878 (female B-cells) | 0.40 | 0.56 | 1.29 | |||
| spleen | -0.76 | 1.27 | 1.17 |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Esophagus_Mucosa, Nerve_Tibial, Pancreas, Pituitary, Stomach, Testis