rs3170766 chr1:54888629 C>A
- Sequence
tgagaggttgtttgcactggactt[C/A]aaaaataaatagcctggacctgta
- ASB in cell types
- HepG2 (hepatoblastoma) MCF7 (Invasive ductal breast carcinoma) liver
- ASB for transcription factors
- CEBPA_HUMAN HNF4A_HUMAN FOXA1_HUMAN SP1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CEBPA_HUMAN | 2.45 | n/a | 1.50 | n/a | No Hit | |||
| HNF4A_HUMAN | 2.57 | -2.87 | 1.33 | n/a | No Hit | |||
| FOXA1_HUMAN | 1.83 | 0.40 | 1.77 | -0.62 | Weak Concordant | |||
| SP1_HUMAN | 1.87 | -1.95 | 1.33 | n/a | No Hit | |||
| RXRA_HUMAN | 2.15 | -0.00 | 1.33 | n/a | No Hit |
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Motif analysis
Genetic associations
GTEx eQTL Adrenal_Gland, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cortex, Cells_Cultured_fibroblasts, Esophagus_Mucosa, Muscle_Skeletal, Nerve_Tibial, Testis, Whole_Blood