rs317688 chr12:69333070 T>C
- Sequence
gacctaatgctctaaggtaagaac[T/C]ggccgccttggcctgttcaattat
- ASB in cell types
- HT29 (colon adenocarcinoma) VCaP (prostate carcinoma)
- ASB for transcription factors
- PPARG_HUMAN NR1H3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| PPARG_HUMAN | 2.24 | -1.60 | 2.00 | n/a | No Hit | |||
| NR1H3_HUMAN | 1.87 | -1.70 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP birth weight, body mass index (bmi), chronic kidney disease, height, parkinsons disease, triglycerides
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellum, Brain_Cortex, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Cells_EBV-transformed_lymphocytes, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Liver, Lung, Minor_Salivary_Gland, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Testis, Thyroid, Whole_Blood