rs317799 chr6:158667063 T>G
- Sequence
aaatcatctctagaaaggtctcag[T/G]atcttcttccccatttcaaccaac
- ASB in cell types
- GM12878 (female B-cells) OCI-LY7 (diffuse large B-cell lymphoma)
- ASB for transcription factors
- IKZF1_HUMAN MTA2_HUMAN IKZF2_HUMAN MEF2B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| IKZF1_HUMAN | 2.08 | -2.57 | 1.33 | n/a | No Hit | |||
| MTA2_HUMAN | 2.52 | n/a | 1.50 | n/a | n/a | |||
| IKZF2_HUMAN | 1.70 | -1.27 | 1.42 | n/a | n/a | |||
| MEF2B_HUMAN | 1.89 | n/a | 1.33 | n/a | No Hit | |||
| EZH2_HUMAN | 1.32 | -0.87 | 1.33 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Tibial, Brain_Hippocampus, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Heart_Left_Ventricle, Muscle_Skeletal, Nerve_Tibial, Pancreas, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Stomach, Testis, Thyroid, Whole_Blood