rs322958 chr17:3557942 T>C
- Sequence
ccccacacccacacagcagcctca[T/C]ccccaccggagaaaaggcagggga
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma) Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- MNT_HUMAN EGR1_HUMAN USF1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MNT_HUMAN | 2.31 | -2.61 | 1.50 | n/a | n/a | |||
| EGR1_HUMAN | 1.65 | -0.09 | 1.33 | 4.19 | Discordant | |||
| USF1_HUMAN | 1.64 | 0.83 | 1.33 | n/a | No Hit |
Items per page:
1 – 3 of 3
Motif analysis
Genetic associations
GTEx eQTL Artery_Tibial, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Liver, Lung, Muscle_Skeletal, Pituitary, Skin_Sun_Exposed_Lower_leg, Thyroid