rs322959 chr17:3557863 C>T
- Sequence
ctgccctcggcgccaggcaggcca[C/T]gcccaccagccacagctgcagcac
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma) HCT-116 (colon carcinoma) keratinocytes Ishikawa (endometrial adenocarcinoma)
- ASB for transcription factors
- MAX_HUMAN USF1_HUMAN MNT_HUMAN SNAI2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| MAX_HUMAN | 1.51 | 0.26 | 1.33 | n/a | No Hit | |||
| USF1_HUMAN | 1.46 | -1.20 | 1.33 | n/a | No Hit | |||
| MNT_HUMAN | 2.01 | -2.30 | 1.50 | n/a | n/a | |||
| SNAI2_HUMAN | 1.15 | -0.37 | 1.50 | n/a | No Hit | |||
| CREB1_HUMAN | 1.50 | -0.69 | 1.67 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Breast_Mammary_Tissue, Cells_EBV-transformed_lymphocytes, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Liver, Lung, Muscle_Skeletal, Pituitary, Prostate, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Small_Intestine_Terminal_Ileum, Spleen, Stomach, Thyroid