rs325444 chr7:127820401 T>C
- Sequence
tggagtttgcttgctgtcggcagt[T/C]tggaagcaaagcagcatgtagttt
- ASB in cell types
- K562 (myelogenous leukemia) HEK293 (embryonic kidney) HepG2 (hepatoblastoma)
- ASB for transcription factors
- ATF3_HUMAN HDAC1_HUMAN FOXK2_HUMAN FOSL1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ATF3_HUMAN | -0.93 | 2.22 | 1.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -1.16 | 1.37 | 1.50 | n/a | n/a | |||
| FOXK2_HUMAN | 1.29 | 0.77 | 1.42 | n/a | n/a | |||
| FOSL1_HUMAN | -1.84 | 1.85 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Adrenal_Gland, Artery_Aorta, Artery_Coronary, Artery_Tibial, Brain_Caudate_basal_ganglia, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Brain_Putamen_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Ovary, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid