rs325700 chr11:6234584 C>T
- Sequence
gccgaacctggccgggcccggttg[C/T]tgctgcggtgttaggtgagttcag
- ASB in cell types
- K562 (myelogenous leukemia) CD14+ monocytes breast tumor tissue
- ASB for transcription factors
- ESR1_HUMAN STAT1_HUMAN HDAC1_HUMAN MNT_HUMAN
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-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | 2.17 | n/a | 2.50 | n/a | No Hit | |||
| STAT1_HUMAN | 2.14 | n/a | 2.50 | n/a | No Hit | |||
| HDAC1_HUMAN | -1.16 | 1.51 | 2.00 | n/a | n/a | |||
| MNT_HUMAN | -0.61 | 1.60 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Aorta, Artery_Tibial, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Spleen, Stomach, Testis, Thyroid, Whole_Blood