rs326052 chr5:1004764 T>C
- Sequence
aggagcgcgcgggggcgctcttgc[T/C]cccaaggccgcacgagcgccaagg
- ASB in cell types
- HEK293 (embryonic kidney) LNCaP C4-2B (prostate carcinoma) HEK293T (embryonic kidney) upper lobe of left lung
- ASB for transcription factors
- ZFX_HUMAN LMBL2_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (T) ASB
-log10 FDR of Alt (C) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ZFX_HUMAN | 1.40 | 0.17 | 1.88 | n/a | No Hit | |||
| LMBL2_HUMAN | 2.02 | -1.71 | 2.00 | n/a | n/a |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Brain_Anterior_cingulate_cortex_BA24, Brain_Cortex, Brain_Frontal_Cortex_BA9, Brain_Hippocampus, Brain_Hypothalamus, Brain_Spinal_cord_cervical_c-1, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Pituitary, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood