rs329119 chr5:134526026 C>T
- Sequence
gcggagcaaggtaagatccagccc[C/T]cggcggatgggccctgcgcatctc
- ASB in cell types
- K562 (myelogenous leukemia)
- ASB for transcription factors
- HDAC1_HUMAN NRF1_HUMAN NCOR1_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| HDAC1_HUMAN | 1.82 | -1.42 | 2.00 | n/a | n/a | |||
| NRF1_HUMAN | 2.13 | -3.00 | 2.00 | -1.42 | Weak Concordant | |||
| NCOR1_HUMAN | 1.84 | n/a | 2.00 | n/a | n/a |
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Motif analysis
