rs329252 chr7:35025501 G>T
- Sequence
ggtttactaagatggttaagaaga[G/T]gtgggtgggggaggtggtgggagt
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- ESR1_HUMAN FOXA1_HUMAN AHR_HUMAN P66B_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| ESR1_HUMAN | -0.42 | 1.85 | 2.40 | n/a | No Hit | |||
| FOXA1_HUMAN | 0.12 | 0.84 | 1.71 | n/a | No Hit | |||
| AHR_HUMAN | -0.57 | 1.53 | 1.50 | n/a | No Hit | |||
| P66B_HUMAN | -1.48 | 1.70 | 1.33 | n/a | n/a | |||
| P53_HUMAN | 0.39 | 2.41 | 1.50 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GRASP advanced age-related macular degeneration (geographic atrophy), birth weight, hdl cholesterol change with statins
GTEx eQTL Adipose_Subcutaneous, Adipose_Visceral_Omentum, Artery_Tibial, Brain_Cerebellar_Hemisphere, Brain_Cerebellum, Breast_Mammary_Tissue, Esophagus_Mucosa, Lung, Muscle_Skeletal, Nerve_Tibial, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid, Whole_Blood