rs330477 chr4:175127559 G>A
- Sequence
aacatttttaaagtttattttagc[G/A]gacagtgactcatgaattaggcaa
- ASB in cell types
- MCF7 (Invasive ductal breast carcinoma)
- ASB for transcription factors
- FOS_HUMAN FOXA1_HUMAN GCR_HUMAN GATA3_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (G) ASB
-log10 FDR of Alt (A) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| FOS_HUMAN | n/a | 3.03 | 2.00 | n/a | n/a | |||
| FOXA1_HUMAN | -1.37 | 1.71 | 1.72 | n/a | No Hit | |||
| GCR_HUMAN | -1.94 | 2.18 | 1.33 | n/a | No Hit | |||
| GATA3_HUMAN | n/a | 1.87 | 2.00 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Brain_Caudate_basal_ganglia, Brain_Nucleus_accumbens_basal_ganglia, Brain_Putamen_basal_ganglia