ADASTRA v1.6.10
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rs333312
chr3:124620627
C
>
G
Sequence
cacatatcaagcttcagaatccac[C/G]actggtggaatatagagagaattt
ASB in cell types
liver
pancreas
Peyer's patch
ASB for transcription factors
CTCF_HUMAN
RAD21_HUMAN
SP1_HUMAN
Search SNPs nearby
View in UCSC Genome Browser
View in PheLiGe
Color scale
-log10 FDR of Ref (
C
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
CTCF_HUMAN
-0.07
2.49
1.00
3.9·10
-9
1.63
n/a
No Hit
RAD21_HUMAN
-1.94
2.31
1.00
5.0·10
-6
1.33
n/a
n/a
SP1_HUMAN
-1.00
1.50
1.00
0.04
1.33
n/a
No Hit
Items per page:
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1 – 3 of 3
Motif analysis
No data available
Genetic associations
GRASP
total cholesterol
GTEx eQTL
Esophagus_Mucosa
,
Liver
,
Skin_Not_Sun_Exposed_Suprapubic
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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+/-100bp
log2-scale
log2(Alt/Ref motif p-value)