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rs333423 chr1:174666557 A>G

Sequence
agtaccaagaagctaaatgggaat[A/G]ttttagaagtttgacccattgttg
ASB in cell types
HepG2 (hepatoblastoma)
ASB for transcription factors
FOXA2_HUMAN RARA_HUMAN SOX5_HUMAN FOXP1_HUMAN

Color scale

color scale ref
-log10 FDR of Ref (A) ASB
color scale alt
-log10 FDR of Alt (G) ASB

Details

Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
FOXA2_HUMAN -1.05 0.69 1.001.5·10-3 1.33 n/a No Hit
RARA_HUMAN -2.28 2.10 1.001.7·10-3 1.33 n/a No Hit
SOX5_HUMAN -2.14 1.93 1.000.02 1.50 n/a No Hit
FOXP1_HUMAN -1.04 1.47 1.000.03 1.42 n/a No Hit
FOXA1_HUMAN -0.30 0.90 1.000.04 1.33 n/a No Hit
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Motif analysis

No data available

Genetic associations

GRASP bipolar disorder ldl cholesterol obesity with early age of onset (age >2) total cholesterol waist hip ratio
GTEx eQTL Adipose_Subcutaneous Brain_Cortex Brain_Substantia_nigra Cells_Cultured_fibroblasts Colon_Transverse Esophagus_Gastroesophageal_Junction Esophagus_Muscularis Heart_Atrial_Appendage Heart_Left_Ventricle Liver Muscle_Skeletal Pancreas Skin_Not_Sun_Exposed_Suprapubic Skin_Sun_Exposed_Lower_leg Small_Intestine_Terminal_Ileum Testis Thyroid Whole_Blood

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