rs334558 chr3:120094435 A>G
- Sequence
aagcccgcattcgcccgggtcagg[A/G]gctgctctgtgtgaggagcgctgt
- ASB in cell types
- periferal blood macrophages tibial nerve A549 (lung carcinoma)
- ASB for transcription factors
- CTCF_HUMAN SPI1_HUMAN JUN_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (A) ASB
-log10 FDR of Alt (G) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 1.53 | 0.65 | 1.35 | n/a | No Hit | |||
| SPI1_HUMAN | 1.67 | 0.64 | 2.04 | n/a | No Hit | |||
| JUN_HUMAN | 0.91 | -0.16 | 2.09 | n/a | No Hit |
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Motif analysis
No data available
Genetic associations
GTEx eQTL Adipose_Subcutaneous, Artery_Aorta, Artery_Tibial, Brain_Hypothalamus, Brain_Nucleus_accumbens_basal_ganglia, Breast_Mammary_Tissue, Cells_Cultured_fibroblasts, Colon_Sigmoid, Colon_Transverse, Esophagus_Gastroesophageal_Junction, Esophagus_Mucosa, Esophagus_Muscularis, Heart_Atrial_Appendage, Lung, Muscle_Skeletal, Nerve_Tibial, Pancreas, Skin_Not_Sun_Exposed_Suprapubic, Skin_Sun_Exposed_Lower_leg, Thyroid