ADASTRA v1.6.10
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rs33691
chr5:16489495
A
>
G
Sequence
gattgtaattctgtaagacagaac[A/G]tgtgctagcagcctgtttcatccc
ASB in cell types
A549 (lung carcinoma)
ASB for transcription factors
RAD21_HUMAN
SMC3_HUMAN
Search SNPs nearby
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Color scale
-log10 FDR of Ref (
A
) ASB
-log10 FDR of Alt (
G
) ASB
Details
Transcription factors
Cell types
Effect size Ref
(+6 others)
Selected columns
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Uniprot ID
Effect size Ref
Effect size Alt
FDR Ref
FDR Alt
Mean BAD
Motif fold change
Motif concordance
RAD21_HUMAN
1.27
-0.11
5.4·10
-6
0.97
1.80
n/a
n/a
SMC3_HUMAN
0.87
0.05
2.2·10
-3
0.89
1.88
n/a
n/a
Items per page:
5
1 – 2 of 2
Motif analysis
No data available
Genetic associations
GRASP
advanced age-related macular degeneration
,
advanced age-related macular degeneration (choroidal neovascularization) vs. no amd
,
body mass index (bmi)
,
college completion
,
microalbuminuria
GTEx eQTL
Skin_Not_Sun_Exposed_Suprapubic
,
Skin_Sun_Exposed_Lower_leg
,
Testis
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Generated by ADASTRA database
2020.06.22 v1.6.10 Soos
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SNP set annotation with ANANASTRA
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log2(Alt/Ref motif p-value)