rs33918 chr5:129904539 C>T
- Sequence
ctcctcctcctcctgcagctcctc[C/T]agctgccgctgctgccgccgctgc
- ASB in cell types
- HEK293T (embryonic kidney) HCT-116 (colon carcinoma) foreskin keratinocyte pancreas
- ASB for transcription factors
- CTCF_HUMAN ZFX_HUMAN PRDM9_HUMAN
View in PheLiGe Color scale
-log10 FDR of Ref (C) ASB
-log10 FDR of Alt (T) ASB
Details
Transcription factors
Cell types
Uniprot ID | Effect size Ref | Effect size Alt | FDR Ref | FDR Alt | Mean BAD | Motif fold change | Motif concordance | |
|---|---|---|---|---|---|---|---|---|
| CTCF_HUMAN | 0.43 | 1.01 | 1.20 | -3.67 | Discordant | |||
| ZFX_HUMAN | -1.22 | 1.38 | 1.50 | n/a | No Hit | |||
| PRDM9_HUMAN | -0.33 | 1.86 | 2.00 | n/a | n/a |
Items per page:
1 – 3 of 3
Motif analysis
